Biblio

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2007
Coppey M, Berezhkovskii AM, Sealfon SC, Shvartsman SY.  2007.  Time and Length Scales of Autocrine Signals in Three Dimensions. Biophysical Journal. 93(6):1917-1922.
2008
Berezhkovskii AM, Coppey M, Sealfon SC, Shvartsman SY.  2008.  Cell-to-cell communication: time and length scales of ligand internalization in cultures of suspended cells.. J. Chem Phys.. 128(22)
Berezhkovskii AM, Coppey M, Sealfon SC, Shvartsman SY.  2008.  Cell-to-cell communication: Time and length scales of ligand internalization in cultures of suspended cells. The Journal of Chemical Physics. 128(22):225102.
Arsov I, Li X, Matthews G, Coradin J, Hartmann BM, Simon AK, Sealfon SC, Yue Z.  2008.  BAC-mediated transgenic expression of fluorescent autophagic protein Beclin 1 reveals a role for Beclin 1 in lymphocyte development. Cell Death and Differentiation. 15(9):1385-1395.
2009
Shvartsman SY, Coppey M, Berezhkovskii AM.  2009.  MAPK signaling in equations and embryos. Fly (Austin). 3(1):62-67.
Berezhkovskii AM, Coppey M, Shvartsman SY.  2009.  Signaling gradients in cascades of two-state reaction-diffusion systems. Proceedings of the National Academy of Sciences. 106(4):1087-1092.
2010
Shimoni Y, Fink MY, Choi S-G, Sealfon SC.  2010.  Plato's Cave Algorithm: Inferring Functional Signaling Networks from Early Gene Expression Shadows. PLoS Computational Biology. 6(6):e1000828.
2011
Costa KD, Kleinstein SH, Hershberg U.  2011.  Biomedical Model Fitting and Error Analysis. Science Signaling. 4(192)
2012
Sugár IP, Chong PL.  2012.  A statistical mechanical model of cholesterol/phospholipid mixtures: linking condensed complexes, superlattices, and the phase diagram.. Journal of the American Chemical Society . 134(2):1164-71.
2013
Aghaeepour N, Finak G, FlowCAP-Consortium, DREAM-Consortium, Hoos H, Mosmann TR, Brinkman R, Brinkman R, Gottardo R, Scheuermann RH.  2013.  Critical assessment of automated flow cytometry data analysis techniques. Nature Methods. 10(3):228-38.
2014
Krammer F, Albrecht RA, Tan GS, Margine I, Hai R, Schmolke M, Runstadler J, Andrews SF, Wilson PC, Cox RJ et al..  2014.  Divergent H7 immunogens offer protection from H7N9 virus challenge.. Journal of Virology. 88(8):3976-85.
Chikina MD, Sealfon SC.  2014.  Increasing consistency of disease biomarker prediction across datasets. PLoS One. 9(4)
Perez-Giron JV, Belicha-Villanueva A, Hassan E, Gomez-Medina S, Cruz JL, Ludtke A, Ruibal P, Albrecht RA, Muñoz-Fontela C.  2014.  Mucosal polyinosinic-polycytidylic acid improves protection elicited by replicating influenza vaccines via enhanced dendritic cell function and T cell immunity.. Journal of immunology . 193(3):1324-1332.
Badgeley MA, Sealfon SC, Chikina MD.  2014.  Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation.. Bioinformatics. :1-7.
2015
Chikina M, Zaslavsky E, Sealfon SC.  2015.  CellCODE: A robust latent variable approach to differential expression analysis for heterogeneous cell populations.. Bioinformatics. :pii:btv015.
Gorenshteyn D, Zaslavsky E, Fribourg M, Christopher Y. Park, 3 11, Wong AK, Tadych A, Hartmann BM, Albrecht RA, García-Sastre A, Kleinstein SH et al..  2015.  Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. Immunity. 43(3):605–614.
Hartmann BM, Thakar J, Albrecht RA, Avey S, Zaslavsky E, Marjanovic N, Chikina M, Fribourg M, Hayot F, Schmolke M et al..  2015.  Human Dendritic Cell Response Signatures Distinguish 1918, Pandemic, and Seasonal H1N1 Influenza Viruses. Journal of Virology. 89(20):10190-205.