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Zaslavsky E*, Hershberg U*, Seto J, Pham AM, Marquez S, Duke JL, Wetmur JG, tenOever BR, Sealfon SC, Kleinstein SH.  2010.  Antiviral Response Dictated by Choreographed Cascade of Transcription Factors. The Journal of Immunology. 184(6)
Zaslavsky E, Nudelman G, Marquez S, Hershberg U, Hartmann BM, Thakar J, Sealfon SC, Kleinstein SH.  2013.  Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. BMC Bioinformatics . 14(Suppl 6):S1.
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Thakar J, Hartmann BM, Marjanovic N, Sealfon SC, Kleinstein SH.  2015.  Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism.. BMC Immunology . 16:46.
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Nudelman G, Ge Y, Hu J, Kumar M, Seto J, Duke JL, Kleinstein SH, Hayot F, Sealfon SC, Wetmur JG.  2010.  Coregulation Mapping Based on Individual Phenotypic Variation in Response to Virus Infection. Immunome Research. 6(2)
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Kleinstein SH.  2008.  Getting Started in Computational Immunology. PLoS Computational Biology. 4(8):e1000128.
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Hartmann BM, Thakar J, Albrecht RA, Avey S, Zaslavsky E, Marjanovic N, Chikina M, Fribourg M, Hayot F, Schmolke M et al..  2015.  Human Dendritic Cell Response Signatures Distinguish 1918, Pandemic, and Seasonal H1N1 Influenza Viruses. Journal of Virology. 89(20):10190-205.
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Gorenshteyn D, Zaslavsky E, Fribourg M, Christopher Y. Park, 3 11, Wong AK, Tadych A, Hartmann BM, Albrecht RA, García-Sastre A, Kleinstein SH et al..  2015.  Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. Immunity. 43(3):605–614.