Biblio

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Book Chapter
Sealfon RA, Sealfon SC.  2010.  Getting Started in Biological Pathway Construction. Systems Biology for Signaling Networks.
Journal Article
Sugár IP, González-Lergier J, Sealfon SC.  2011.  Authors response to correspondence about an improved compensation method.. Cytometry A. (2011 Nov 7)
Berezhkovskii AM, Coppey M, Sealfon SC, Shvartsman SY.  2008.  Cell-to-cell communication: time and length scales of ligand internalization in cultures of suspended cells.. J. Chem Phys.. 128(22)
Chikina M, Zaslavsky E, Sealfon SC.  2015.  CellCODE: A robust latent variable approach to differential expression analysis for heterogeneous cell populations.. Bioinformatics. :pii:btv015.
Hartmann BM, Marjanovic N, Nudelman G, Moran TM, Sealfon SC.  2014.  Combinatorial cytokine code generates anti-viral state in dendritic cells.. Frontiers in Immunology. 5(73)
Zaslavsky E, Hayot F, Sealfon SC.  2012.  Computational approaches to understanding dendritic cell responses to influenza virus infection. Immunologic Research. 54((1-3)):160-8.
Braun DA, Fribourg M, Sealfon SC.  2013.  Cytokine response is determined by duration of receptor and STAT3 activation.. The Journal of Biological Chemistry. 288(5):2986-93.
Badgeley MA, Sealfon SC, Chikina MD.  2014.  Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation.. Bioinformatics. :1-7.
Chikina MD, Sealfon SC.  2014.  Increasing consistency of disease biomarker prediction across datasets. PLoS One. 9(4)
Gómez HF, Hucka M, Keating SM, Nudelman G, Iber D, Sealfon SC.  2016.  MOCCASIN: converting MATLAB ODE models to SBML. Bioinformatics. 32(12):1905-6.
Fribourg M, Hartmann BM, Schmolke M, Marjanovic N, Albrecht RA, García-Sastre A, Sealfon SC, Jayaprakash C, Hayot F.  2014.  Model of influenza A virus infection: Dynamics of viral antagonism and innate immune response.. Journal of Theoretical Biology. 351(C):47-57.
Hartmann BM, Li W, Jia J, Patil S, Marjanovic N, Martínez-Romero C, Albrecht RA, Hayot F, García-Sastre A, Wetmur J et al..  2013.  Mouse dendritic cell influenza virus infectivity is much lower than for human and is hemagglutinin subtype dependent.. Journal of Virology. 87(3):1916-8.
Shimoni Y, Nudelman G, Hayot F, Sealfon SC.  2011.  Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation. PLoS One. 6(12)
Sugár IP, Das J, Jayaprakash J, Sealfon SC.  2017.  Multiscale Modeling of Complex Formation and CD80 Depletion During Immune Synapse Development.. Biophysical Journal. 112(5):997-1009.
Tabbaa OP, Nudelman G, Sealfon SC, Hayot F, Jayaprakash C.  2013.  Noise propagation through cytokine signaling leads to fluctuations in interferon-induced genes. BMC Systems Biology . 7(1)
Seto J, Qiao L, Guenzel CA, Xiao S, Shaw ML, Hayot F, Sealfon SC.  2010.  Novel Nipah virus immune-antagonism strategy revealed by experimental and computational study. Journal of Virology. 84(21)
Nogusa S, Thapa RJ, Dillon CP, Liedmann S, Oguin 3rdTH, Ingram JP, Rodriguez DA, Kosoff R, Sharma S, Sturm O et al..  2016.  RIPK3 Activates Parallel Pathways of MLKL-Driven Necroptosis and FADD-Mediated Apoptosis to Protect against Influenza A Virus.. Cell Host Microbe. 20(1):13-24.
Hu J, Nudelman G, Shimoni Y, Kumar M, Ding Y, López C, Hayot F, Wetmur JG, Sealfon SC.  2011.  Role of Cell-to-Cell Variability in Activating a Positive Feedback Antiviral Response in Human Dendritic Cells.. PLoS One. 6
Patil S, Fribourg M, Ge Y, Batish M, Tyagi S, Hayot F, Sealfon SC.  2015.  Single-cell analysis shows that paracrine signaling by first responder cells shapes the interferon-β response to viral infection.. Science Signaling . 8(363)
Vodovotz Y, Xia A, Read EL, Bassaganya-Riera J, Hafler DA, Sontag E, Wang J, Tsang JS, Day JD, Kleinstein SH et al..  2017.  Solving Immunology? Trends Immunol.. 38(2):116-127.
Greene CS, Krishnan A, Wong AK, Ricciotti E, Zelaya RA, Himmelstein DS, Zhang R, Hartmann BM, Zaslavsky E, Sealfon SC.  2015.  Understanding multicellular function and disease with human tissue-specific networks.. Nature Genetics. 47(6):569-76.