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From TSBwiki

Welcome to the Translational Systems Biology wiki at Mount Sinai School of Medicine.

If you are associated with the Center for Translational Systems Biology, ask for a log-in and skim the FAQ.

This site can now be found at http://tsb.mssm.edu

Access the Dendritic Cell Signaling Diagram Here

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Immunology | Education/Lectures | Protocols | Gene | Virus | Experiments | Miscellaneous | Modeling

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http://tsb.mssm.edu/prime

http://civia.org

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[edit] Immunology Allergen databases C-type lectins Cluster of Differentiation Dendritic Cell Signaling Dendritic cell miRNA pilot Dendritic cells FAQS Modeling Consortium Human DCs (primers) IFN release kinetics for modeling DCprepslog.xls ImmPort Immunology qPCR Primers Interesting Papers Immunology Interferon Beta Regulation Interferon regulatory factors Interferons Microscopy (DCs) Monoclonals Moran lab miltenyi NS1 array Multiple Sclerosis Myeloid Dendritic Cell Prep NDV experiments Plasmacytoid Dendritic Cell Prep Prototype Dendritic Cell Signaling SEA Review SEA experiments Schistosomiasis T cells (primers) TSB Seminar Series TSST experiments Toll-like receptors Viral Evasion Virus Preparation in Eggs

[edit] Education/Lectures DC Education Sessions DC MSSM Weekly Presentations DC MSSM Weekly Presentations Fall2006 Interesting Papers Gonadotrope Interesting Papers Immunology Interesting Papers Modeling Interferon Induction/Signaling by Levy 12/05 Interferon pretreatment Modeling Education Program Overview NCBI Molecular Biology Resources Princeton Seminars TSB Seminar Series Viral Antagonists Lecture by Garcia-Sastre 12/05

[edit] Modeling Biopathwise Celldesigner Cytoscape Dendritic Cell Signaling Dizzy Flow Cytometry and Statistics ImmPort Interesting Papers Modeling Interferon signaling modeling Model System Interfaces Model and Data Formating (MSSM) Modelers Meeting 1.19.06 Modeling Education Program Overview Network Construction Rules PANTHER PRIME Pathway Repository Prototype Dendritic Cell Signaling SBML TF Network Analysis TLR3 Modeling

[edit] Experiments 1. First Dataset for PLS Modeling 2 Stochastic Gene Experiment Ideas 2A.mGluR2.studies 3 Experiment Ideas General 4. Special Population Autophagy Biopathwise Dendritic Cell Preps Dendritic cell miRNA pilot Flow Cytometry and Statistics IFN release kinetics for modeling DCprepslog.xls Knockdown (DCs) Monoclonals Moran lab miltenyi NS1 array NDV experiments NDV timecourse analysis Nipah experiments Paracrine/Autrocrine signaling PolyI:C experiments Priming Turgeon SEA experiments SiRNA TLR agonists experiments TSST experiments

[edit] Gene BCL10 BDCA-2 CXCL10 Caspase8 Dectin-1 FADD HLA-DRB1 IFNAR1 IFNAR2 IL6 IP10 IRF1 IRF3 IRF5 IRF7 JAK1 JAK2 MAP3K14 MAP3K7 MAP3K8 MAVS MD2 Mda5 MyD88 NFKBIK NFkB NIK PIAS1 PKR RIG-I RIP1 SIKE STAT1 STAT3 TAB1 TAK1 TBK1 TICAM1 TICAM2 TRAF2 TRAF3 TRAF6 TRAM TRIF Gene Toll-like receptors Tpl2

[edit] Protocols Amnis Antibody labeling Bone marrow-derived dendritic cell Cellular bar-coding Competitive PCR Data Standards multiplex elisa (luminex) Data Standards qPCR Dendritic Cell Preps ELISA FACS staining IFN-beta ELISA Development Internal FACS staining Knockdown (DCs) LSRII Luminex Microscopy (DCs) Myeloid Dendritic Cell Prep Plasmacytoid Dendritic Cell Prep Primer Design RNA Amplification RNA precipitation Real-Time PCR: Automated Analysis Real-Time PCR: Monthly Billing for PlateRuns Real-Time PCR: Primer Design Real-Time PCR: Reverse Transcription Real-Time PCR: SYBR Green T cell prep Ficoll Transcription factor array Transcription factor assay Virus Preparation in Eggs Virus stocks Western blot

[edit] Admin Annual Report Guidelines Bika CaLIMS Luminexdiscount.pdf PhpMyAdmin RDBMS Wiki mods

[edit] Miscellaneous 20 01 Renovation Annual Report Guidelines CellType Ontology Directed Reading Braun Directed Reading Chary FAQS Modeling Consortium GO evidence code Interesting Papers Gonadotrope Interesting Papers Immunology Interesting Papers Modeling NIH Site Visit Nov 22, 2005 Model consortium meeting Ontology PCR Data Manager PCR amplification paper Princeton Seminars Publication Instructions Sandbox Sealfon Lab Meetings TSB Seminar Series Talk Powerpoints Useful Links

[edit] Virus Newcastle Disease Virus Nipah Virus Sendai Virus Viral Evasion [edit] Mononegavirales Newcastle Disease Virus Nipah Virus Sendai Virus Paramyxovirus [edit] Paramyxovirus Newcastle Disease Virus Nipah Virus Sendai Virus [edit] Orthomyxovirus [edit] Paramyxovirus Newcastle Disease Virus Nipah Virus Sendai Virus

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